[Bioperl-l] Bio::DB::GenBank (fwd)

Jason Stajich jason at cgt.duhs.duke.edu
Thu Dec 11 09:43:02 EST 2003



--
Jason Stajich
Duke University
jason at cgt.mc.duke.edu

---------- Forwarded message ----------
Date: Wed, 10 Dec 2003 16:45:58 -0800 (PST)
From: Shuai Weng <shuai at genome.stanford.edu>
To: amackey at virginia.edu
Cc: jason at bioperl.org
Subject: Bio::DB::GenBank


Hi,

	The Bio::DB::GenBank doesn't work for me now.

The example code I used is below.

======================
use strict;
use Bio::DB::GenBank;

my $gb  = new Bio::DB::GenBank;

my $seqId = 'L00683';

my $seqObj = $gb->get_Stream_by_id($seqId);

while ( my $seq = $seqObj->next_seq() ) {

	### do something here

}
======================

	This module worked great before. I was wondering
if the problem is due to the NCBI entrez url change...

Cheers,

Shuai



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