[Bioperl-l] Bio::DB::GenBank (fwd)
Jason Stajich
jason at cgt.duhs.duke.edu
Thu Dec 11 09:43:02 EST 2003
--
Jason Stajich
Duke University
jason at cgt.mc.duke.edu
---------- Forwarded message ----------
Date: Wed, 10 Dec 2003 16:45:58 -0800 (PST)
From: Shuai Weng <shuai at genome.stanford.edu>
To: amackey at virginia.edu
Cc: jason at bioperl.org
Subject: Bio::DB::GenBank
Hi,
The Bio::DB::GenBank doesn't work for me now.
The example code I used is below.
======================
use strict;
use Bio::DB::GenBank;
my $gb = new Bio::DB::GenBank;
my $seqId = 'L00683';
my $seqObj = $gb->get_Stream_by_id($seqId);
while ( my $seq = $seqObj->next_seq() ) {
### do something here
}
======================
This module worked great before. I was wondering
if the problem is due to the NCBI entrez url change...
Cheers,
Shuai
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