[Bioperl-l] How to proceed with 1.4?

[Brian Osborne]

Heikki,

I just added a Feature and Annotation HOWTO, it's almost done. Comments
welcome, of course.

When we're close to release I'll remake all the HOWTOs for the Web site, add
new links if necessary, and you can create the text versions for the
package, I trust.

Brian O.

-----Original Message-----
From: bioperl-l-bounces at portal.open-bio.org
[mailto:bioperl-l-bounces at portal.open-bio.org]On Behalf Of Heikki
Lehvaslaiho
Sent: Tuesday, December 09, 2003 5:24 AM
To: Bioperl
Cc: Rob Edwards; steve_chervitz @affymetrix.com>, Ewan Birney
<birney at ebi.ac.uk>
Subject: [Bioperl-l] How to proceed with 1.4?


I have so far relased three snapshots from the bioperl core/live cvs head.
Things have settled down a bit, but there are still outstanding issues.
Especially:

- restriction analysis fixes need to merged and commited (Rob)
- SearchIO::psiblast & related module removal (Steve)
- really long qualifier names in sequence feature tables (Ewan?) #1561

I'd like to see these in before I release the next and hopefully last snap
shot. Or would some like to see a snapshot out now?


Then there is the issue of other cvs modlues closely tied to core. Ext is
simle there have been one major addition during last six months which is
well
documented and seems to work without problems. I can release that the same
day as core.

Run is a bit more complicated. There are issues with
- newer version of EMBOSS, #1481
- TCoffee, #1453, #1557 ( and  #1510, #1514)

We need someone to look into these. It would be great to have them fixed
this
week so the we could have all three packages out before Christmas.

Any comments and contributions to that effect welcome,

        -Heikki


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      _/      _/                      http://www.ebi.ac.uk/mutations/
     _/  _/  _/  Heikki Lehvaslaiho    heikki_at_ebi ac uk
    _/_/_/_/_/  EMBL Outstation, European Bioinformatics Institute
   _/  _/  _/  Wellcome Trust Genome Campus, Hinxton
  _/  _/  _/  Cambs. CB10 1SD, United Kingdom
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