[Bioperl-l] running remoteblast

[Jason Stajich]

Bio::Tools::Run::RemoteBlast is for running BLAST on NCBI through their
web interface.

-jason

On Mon, 1 Dec 2003, omid gulban wrote:

> Hi,
>
> I would like to know how to run a remoteblast query using bioperl modules. I have looked in the FAQs but the instructions provided were for StandaloneBlast. I followed the instruction by received the following message:
>
>
> -------------------- WARNING ---------------------
> MSG: cannot find path to blastall
> ---------------------------------------------------
>
> I assume that you need to install blast on your local machine.
>
> I am new to Bioperl. I don't know what modules to use?
> How can I run a simple blast querry using NCBI?
>
>
> Thanks
>
> ACGT

--
Jason Stajich
Duke University
jason at cgt.mc.duke.edu