[Bioperl-l] StandAloneBlast

[Jason Stajich]

Do you actually send different parameters to the program James or are you
just specifying a different path and executable name?

-jason
On Mon, 28 Apr 2003, Prachi Shah wrote:

> Hi,
>
> That sounds very useful. I have had this problem where
> I want to use the Paracel BLAST from a Perl program
> and really wished that it were as easy as the serial
> blastall with BioPerl.
> If it is somehow decided that this modified
> StandAloneBlast.pm not be included in Bioperl, can I
> still get the code?
>
> Thanks,
> Prachi.
>
>
> --- "Holzwarth,James,LAUSANNE,NRC/BS"
> <James.Holzwarth at rdls.nestle.com> wrote:
> > Hello,
> >
> >   I have made a modification in our
> > StandAloneBlast.pm to work with paracel
> > and I was curious if this would be of interest to
> > include in BioPerl.
> > Basically, I have added a method to send the blast
> > to paracel using pb
> > blastall. Let me know if you would be interested
> > and, if so, how should I
> > proceed.
> >
> > Regards,
> > Jim
> > _______________________________________________
> > Bioperl-l mailing list
> > Bioperl-l at bioperl.org
> > http://bioperl.org/mailman/listinfo/bioperl-l
>
>
> __________________________________
> Do you Yahoo!?
> The New Yahoo! Search - Faster. Easier. Bingo.
> http://search.yahoo.com
> _______________________________________________
> Bioperl-l mailing list
> Bioperl-l at bioperl.org
> http://bioperl.org/mailman/listinfo/bioperl-l
>

--
Jason Stajich
Duke University
jason at cgt.mc.duke.edu