[Bioperl-l] Re: t/EMBL_DB.t, t/BioGraphics tests breaking

[Jason Stajich]

Ack, heikki, EBI keeps changing the way the sequences ids are returned
from SRS with dbfetch, this is way annoying.  I will change the test to be
more forgiving and just check that it contains the pattern 'embl.+BUM'.

As for the GD problems, the gif/png files on the branch had been updated
but not on the trunk, this is fixed now.  These tests should pass now -
need to make sure and test on an old GD version with gif support to make
sure we are all okay.  I migrated the changed files from the branch to
trunk for t1.* and t2.* in the data/biographics dir.

I found another broken part which doesn't detech for Text::Shellwords
before 'use'ing the Bio::Graphics module, this exits gracefully now.

-jason
On Mon, 8 Jul 2002, Hilmar Lapp wrote:

> Apart from Exception.t I get two more failures:
>
> EMBL_DB.t:
>
> cb6: bioperl-live 15:40 15>perl t/EMBL_DB.t
> 1..15
> ok 1
> ok 2
> ok 3
> ok 4
> ok 5
> not ok 6
> # Test 6 got: 'embl:BUM' (t/EMBL_DB.t at line 67)
> #   Expected: 'embl|J02231|BUM'
> ok 7
> ok 8
> ok 9
> ok 10
> ok 11
> ok 12
> ok 13
> ok 14
> ok 15
>
> and BioGraphics.t:
>
> cb6: bioperl-live 15:41 16>perl t/BioGraphics.t
> 1..14
> not ok 1
> # Failed test 1 in t/BioGraphics.t at line 114
> not ok 2
> # Failed test 2 in t/BioGraphics.t at line 114 fail #2
> ok 3
> ok 4
> ok 5
> ok 6
> ok 7
> ok 8
> ok 9
> ok 10
> ok 11
> ok 12
> ok 13
> ok 14
>
> Does the latter indicate a problem with my GD installation?
>
> 	-hilmar
>

-- 
Jason Stajich
Duke University
jason at cgt.mc.duke.edu