[Bioperl-l] another BPlite bug? Someone please confirm...

[Jason Eric Stajich]

Mark -

Roger Hall has been working on this with Hilmar and myself.  I have not
run tests lately to verify things - do you want to send out a synopsis
and/or some test files.  What is best is if people with commit access can
add tests for bugs that people report, we both improve our test suite and
make it easier for more people to join in and help.  So there very may
well be some bugs in the fixes that have propigated - I assume you DO have
the most up-to-date version as there were some bugs in there as well.


-Jason

On Wed, 5 Sep 2001, Mark Wilkinson wrote:

> Hi all,
>
> I noticed yesterday that BPlite was not correctly parsing strand and frame
> information from my blastx reports.  I fixed the bug in my local copy, but I
> am nervous about committing it because I can't be sure that my blast reports
> are correctly formatted (we create our own after blasting on the cluster, and
> they have never been thoroughly stress-tested...)
>
> Can anyone run a couple of Blast reports through the mill and see if they can
> duplicate this error?  As far as I can tell it should appear from parsing any
> Blast report, but I noticed it on the Blastx.
>
> As soon as I am certain that I wont break things I will commit the changes.
>
> Cheers all!
>
> M
>
> --
> --------------------------------
> "Speed is subsittute fo accurancy."
> ________________________________
>
> Dr. Mark Wilkinson
> Bioinformatics Group
> National Research Council of Canada
> Plant Biotechnology Institute
> 110 Gymnasium Place
> Saskatoon, SK
> Canada
>
>
>
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-- 
Jason Stajich
Duke University
jason.stajich@duke.edu