[Bioperl-l] another BPlite bug? Someone please confirm...

[Mark Wilkinson]

Hi all,

I noticed yesterday that BPlite was not correctly parsing strand and frame
information from my blastx reports.  I fixed the bug in my local copy, but I
am nervous about committing it because I can't be sure that my blast reports
are correctly formatted (we create our own after blasting on the cluster, and
they have never been thoroughly stress-tested...)

Can anyone run a couple of Blast reports through the mill and see if they can
duplicate this error?  As far as I can tell it should appear from parsing any
Blast report, but I noticed it on the Blastx.

As soon as I am certain that I wont break things I will commit the changes.

Cheers all!

M

--
--------------------------------
"Speed is subsittute fo accurancy."
________________________________

Dr. Mark Wilkinson
Bioinformatics Group
National Research Council of Canada
Plant Biotechnology Institute
110 Gymnasium Place
Saskatoon, SK
Canada