[Bioperl-l] MEME/MAST parsers?

Benjamin Berman benb@fruitfly.org
Wed, 30 May 2001 12:57:24 -0700


Hi there, I'm a new user (maybe developer) of BioPerl.   Does anyone
know if BioPerl contains a parser for meme or mast?   I might write a
module for AlignIO to get results out of a meme alignment.  Down the
road I might do the same for mast.

Also, is there any standard way of printing debug comments?  I saw a
"verbose" global variable so maybe that's it?

Thanks a lot,
ben.

-- 
Benjamin Berman

Rubin Lab, 539 Life Sciences Addition

Department of Molecular and Cell Biology

University of California, Berkeley

benb@fruitfly.org