Bioperl: Bioperl 0.6.1 release
James Gilbert
jgrg@sanger.ac.uk
Wed, 10 May 2000 14:31:50 +0100 (BST)
Hilmar,
Unfortunately, Keith's improved location line
parsing isn't in the 06 branch. I think this will
have to wait for the next branch. We also need to
propagate these changes into the EMBL/Genbank
_print_FTHelper routines so that the same location
lines which are parsed get printed out!
James
On Wed, 10 May 2000, Hilmar Lapp wrote:
> hilmar.lapp@pharma.Novartis.com wrote:
> > I have some fixes to FTHelper.pm waiting to be committed (main trunk), but
> > Keith's review of the snippet I've sent him is still pending. If his
> > previous code was correct, then my fix requires a small change.
> >
> > Without these fixes, GenBank, EMBL and SwissProt in their current releases
> > will fail to be parsed. With the fixes propagated (after commitment) to the
> > branch, some features will still fail, but result in warnings and lost
> > features.
> >
>
> Meanwhile Keith has responded, and he thinks my fix is correct. I will not be
> able to do any stuff with the bioperl dist before tonight. Let me know whether
> I shall propagate the fixes to the branch, or whether you want to do this
> yourself.
>
> Cheers,
>
> Hilmar
>
> --
> -----------------------------------------------------------------------
> Hilmar Lapp email: hlapp@gmx.net
> NFI Vienna, IFD/Bioinformatics phone: +43 1 86634 631
> A-1235 Vienna fax: +43 1 86634 727
> ROI: Bioinformatics (arrays, expression, seqs), Programming, Databases,
> Mountain Biking (hard tail, hard fork: feel the trail)
> -----------------------------------------------------------------------
>
James G.R. Gilbert
The Sanger Centre
Wellcome Trust Genome Campus
Hinxton
Cambridge Tel: 01223 494906
CB10 1SA Fax: 01223 494919
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