Bioperl: 06 - pre release 2.

[Leonardo Marino-Ramirez]

Ewan Birney wrote:
> 
> The second pre release of the 06 series is out for people to download
> and test/break/complain about. It is at
> 
> ftp://bio.perl.org/pub/birney
> 
> bioperl-06pre2.tar.gz
> 
> 
> **YOU** can help with c) by downloading the code and attempting
> to run your existing scripts and/or writing new ones which
> make the system not behave how you want it to...
> 

t/DB is failing.

terminator [~/perl/bioperl-06pre2] % make test
PERL_DL_NONLAZY=1 /usr/local/bin/perl -I./blib/arch -I./blib/lib
-I/usr/share/lib/perl5/irix-n32/5.00404 -I/usr/share/lib/perl5 -e 'use
Test::Harness qw(&runtests $verbose); $verbose=0; runtests @ARGV;' t/*.t
t/Annotation........ok
t/Blast.............ok
t/CodonTable........ok
t/DB................Warning: Couldn't connect to Genbank with
Bio::DB::GenBank.pm!
{Probably no network access.
 Skipping Test
Warning: Couldn't connect to Genbank with Bio::DB::GenPept.pm!
Probably no network access
ok
t/HSP...............ok
t/HTML..............ok
t/Index.............ok
t/PrimarySeq........ok
t/Range.............ok
t/RangeI............ok
t/RestrictionEnzyme.ok
t/Sbjct.............ok
t/Seq...............ok
t/SeqAnal...........ok
t/SeqFeature........ok
t/SeqIO.............ok
t/Sigcleave.........ok
t/SimpleAlign.......ok
t/UnivAln...........ok
t/WWW...............ok
t/exception.........ok
t/hmmer.............ok
All tests successful.
Files=22,  Tests=144, 21 secs (11.80 cusr  4.26 csys = 16.06 cpu)
terminator [~/perl/bioperl-06pre2] % uname -a
IRIX64 terminator 6.5 07151433 IP25
terminator [~/perl/bioperl-06pre2] %

--------------------------

tofu [~/software/bioperl-06pre2] % make test
PERL_DL_NONLAZY=1 /usr/bin/perl -Iblib/arch -Iblib/lib
-I/usr/lib/perl5/5.00503/i386-linux -I/usr/lib/perl5/5.00503 -e 'use
Test::Harness qw(&runtests $verbose); $verbose=0; runtests @ARGV;' t/*.t
t/Annotation........ok
t/Blast.............ok
t/CodonTable........ok
t/DB................Warning: Couldn't connect to Genbank with
Bio::DB::GenBank.pm!
{Probably no network access.
 Skipping Test
Warning: Couldn't connect to Genbank with Bio::DB::GenPept.pm!
Probably no network access
ok
t/HSP...............ok
t/HTML..............ok
t/Index.............ok
t/PrimarySeq........ok
t/Range.............ok
t/RangeI............ok
t/RestrictionEnzyme.ok
t/Sbjct.............ok
t/Seq...............ok
t/SeqAnal...........ok
t/SeqFeature........ok
t/SeqIO.............ok
t/Sigcleave.........ok
t/SimpleAlign.......ok
t/UnivAln...........ok
t/WWW...............ok
t/exception.........ok
t/hmmer.............ok
All tests successful.
Files=22,  Tests=144, 13 wallclock secs ( 7.83 cusr +  0.35 csys =  8.18
CPU)
tofu [~/software/bioperl-06pre2] % uname -a
Linux tofu.tamu.edu 2.2.12-20smp #1 SMP Mon Sep 27 10:34:45 EDT 1999
i686 unknown
tofu [~/software/bioperl-06pre2] % 


Regards, 

Leonardo Marino-Ramirez
marino@tofu.tamu.edu
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