Bioperl: running local blasts

[Alan Williams]

Does your LocalBlast.pm module have the following near the top:

   use Bio::Root::Object    qw(&_rearrange);

-A

---------------------------------
Alan Williams
Neomorphic, Inc.
Alan@Neomorphic.com
510-981-8513
---------------------------------

On Wed, 21 Jun 2000, Joey Morris wrote:

> Date: Wed, 21 Jun 2000 15:58:13 -0400
> From: Joey Morris <rjmorris@unity.ncsu.edu>
> To: vsns-bcd-perl@lists.uni-bielefeld.de
> Subject: Bioperl: running local blasts
> 
> Can anyone tell me if they are successfully running local blast searches
> using the LocalBlast.pm module? I just downloaded 0.6.1 and I get this error
> when running a local blast:
> 
> *** 1 Blast reports produced fatal errors:
> Undefined subroutine &Bio::Root::Object::_rearrange called at
> /local/lib/perl/lib/Bio/Tools/Blast/Run/LocalBlast.pm line 309.
> 
> I experienced the same issue with 0.6.0 but not with the 0.05.1 release.
> I've reported it as a bug but there's been no progess on it apparently.
> 
> Thanks,
> Joey
> 
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