Bioperl: running local blasts

[Fernan Aguero]

Joey Morris wrote:

> Can anyone tell me if they are successfully running local blast searches
> using the LocalBlast.pm module?

I don't know about the LocalBlast.pm module, but I'm happy running and parsing
all my local blasts using the NHGRI::Blastall module. It lets you do local
(blastall), remote (blastcl3 or netblast) and wu-blast searches. Also if you
don't have a local blast installation you can do blast searches over the web
using NHGRI::Blastall and the LWP Perl modules (available from CPAN).

NHGRI::Blastall page is at <http://genome.nhgri.nih.gov/blastall/>

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