Bioperl: Question: reading in blast results from scalar?

[Aaron J Mackey]

Another option would be to use the IO::Scalar module to wrap the scalar as
a filehandle, and pass that along to the parser (not tested, but can't see
why that wouldn't work).

-Aaron

On Tue, 15 Feb 2000, David Block wrote:

> This may be a naive answer, but could you just print the scalar to a file
> (or STDOUT) and then pass it along (pipe it)?
> 
> -Dave
> 
> On Tue, 15 Feb 2000, Nathan O. Siemers wrote:
> 
> > 
> > Perhaps this is a general perl question.
> > 
> > 	How does one submit a blast output for parsing, etc, using
> > 	Blast.pm, when you have stored the blast result itself into a
> > 	scalar, rather than a file?
> > 
> > 	Thanks,
> > 
> > 	nathan
> > 
> > -- 
> > N a t h a n   O .  S i e m e r s
> > Bioinformatics
> > Division of Applied Genomics
> > Bristol-Myers Squibb Pharmaceutical Research Institute
> > Hopewell Building 3B, P.O. Box 5400, Princeton, NJ 08543-5400
> > 609 818-6568
> > siemersn@bms.com
> > 
> > =========== Bioperl Project Mailing List Message Footer =======
> > Project URL: http://bio.perl.org/
> > For info about how to (un)subscribe, where messages are archived, etc:
> > http://www.techfak.uni-bielefeld.de/bcd/Perl/Bio/vsns-bcd-perl.html
> > ====================================================================
> > 
> 
> =========== Bioperl Project Mailing List Message Footer =======
> Project URL: http://bio.perl.org/
> For info about how to (un)subscribe, where messages are archived, etc:
> http://www.techfak.uni-bielefeld.de/bcd/Perl/Bio/vsns-bcd-perl.html
> ====================================================================
> 

-- 
 o ~   ~   ~   ~   ~   ~  o
/ Aaron J Mackey           \
\  Dr. Pearson Laboratory  / 
 \ University of Virginia  \     
 /  (804) 924-2821          \
 \  amackey@virginia.edu    /
  o ~   ~   ~   ~   ~   ~  o


=========== Bioperl Project Mailing List Message Footer =======
Project URL: http://bio.perl.org/
For info about how to (un)subscribe, where messages are archived, etc:
http://www.techfak.uni-bielefeld.de/bcd/Perl/Bio/vsns-bcd-perl.html
====================================================================