Bioperl: Question: reading in blast results from scalar?

David Block dblock@gene.pbi.nrc.ca
Tue, 15 Feb 2000 10:50:13 -0600 (CST)


This may be a naive answer, but could you just print the scalar to a file
(or STDOUT) and then pass it along (pipe it)?

-Dave

On Tue, 15 Feb 2000, Nathan O. Siemers wrote:

> 
> Perhaps this is a general perl question.
> 
> 	How does one submit a blast output for parsing, etc, using
> 	Blast.pm, when you have stored the blast result itself into a
> 	scalar, rather than a file?
> 
> 	Thanks,
> 
> 	nathan
> 
> -- 
> N a t h a n   O .  S i e m e r s
> Bioinformatics
> Division of Applied Genomics
> Bristol-Myers Squibb Pharmaceutical Research Institute
> Hopewell Building 3B, P.O. Box 5400, Princeton, NJ 08543-5400
> 609 818-6568
> siemersn@bms.com
> 
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