Bioperl: Question: reading in blast results from scalar?

[Nathan O. Siemers]

Sure you could.  But for now humor me, how would one avoid that? ;)

nathan




David Block <dblock@gene.pbi.nrc.ca> writes:

> This may be a naive answer, but could you just print the scalar to a file
> (or STDOUT) and then pass it along (pipe it)?
> 
> -Dave
> 
> On Tue, 15 Feb 2000, Nathan O. Siemers wrote:
> 
> > 
> > Perhaps this is a general perl question.
> > 
> > 	How does one submit a blast output for parsing, etc, using
> > 	Blast.pm, when you have stored the blast result itself into a
> > 	scalar, rather than a file?
> > 
> > 	Thanks,
> > 
> > 	nathan
> > 
> > -- 
> > N a t h a n   O .  S i e m e r s
> > Bioinformatics
> > Division of Applied Genomics
> > Bristol-Myers Squibb Pharmaceutical Research Institute
> > Hopewell Building 3B, P.O. Box 5400, Princeton, NJ 08543-5400
> > 609 818-6568
> > siemersn@bms.com
> > 
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-- 
N a t h a n   O .  S i e m e r s
Bioinformatics
Division of Applied Genomics
Bristol-Myers Squibb Pharmaceutical Research Institute
Hopewell Building 3B, P.O. Box 5400, Princeton, NJ 08543-5400
609 818-6568
siemersn@bms.com
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