Bioperl: Parser of genbank features (and swissprot and ...)

[Lincoln Stein]

Hi Rubin,

In the short term, you're welcome to use the BoulderIO parser, which
does a good job at parsing GenBank feature tables.  There are also
PIR, SwissProt and Medline parsers in the works, but their someone
else's project and I'm not sure when they will be released.

	ttp://stein.cshl.org/software/boulder/

In the long term, you'll probably want to use one of the "official"
genbank parsers to be developed in the Bioperl project.  Or perhaps
the XML representation.

Lincoln


Rubin Eitan writes:
 > I am in dire need of a parser for the genbank/swissprot/pir feature
 > table(s). I need it to be current too (some changes in release 111 of
 > genbank). Anything out there? 
 > 
 >        Eitan.  
 > 
 > 
 > ======================================================================
 > Eitan Rubin,
 > Plant Genetics, Weizmann Inst of Science, Rehovot, Israel.  
 > EMail: bcrubin@dapsas1.weizmann.ac.il
 > Tel: (00972)-(8)9342421 Fax: (00972)-(8)9344181
 > EitanR@BioMOO (http://bioinfo.weizmann.ac.il/BioMOO) - visit 
 >                                             the GCG help desk
 > 
 > in vivo -> in vitro -> in silico
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Lincoln D. Stein                           Cold Spring Harbor Laboratory
lstein@cshl.org			                  Cold Spring Harbor, NY
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