Bioperl: Start of alignment debate...

[Rubin Eitan]

Just a quick thought - you should consider the blocks type of MSA, i.e. 
were some regions are aligned (w/o gaps) and others are simply 
disregarded. An alignemnt using blocks would actually be a collection of 
alignments, but may still be used as a single alignment for purposes such 
as tree construction.

       Eitan.  


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Eitan Rubin,
Plant Genetics, Weizmann Inst of Science, Rehovot, Israel.  
EMail: bcrubin@dapsas1.weizmann.ac.il
Tel: (00972)-(8)9342421 Fax: (00972)-(8)9344181
EitanR@BioMOO (http://bioinfo.weizmann.ac.il/BioMOO) - visit 
                                            the GCG help desk

in vivo -> in vitro -> in silico
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