Bioperl: Central distribution 0.04.4

[Steve Chervitz]

Bioperlers,

As promised, a maintenance release of the central distribution is now
available (version 0.04.4). The new Changes are included at the end of
this message.

Bioperl release website: http://bio.perl.org/Core/Latest/

Download directly:
  http://bio.perl.org/Core/Latest/bioperl-0.04.4.tar.gz (828K) 
  http://bio.perl.org/Core/Latest/bioperl-0.04.4.zip (974K) 
  ftp://bio.perl.org/pub/DIST/bioperl-0.04.4.tar.gz 
  ftp://bio.perl.org/pub/DIST/bioperl-0.04.4.zip

Regards,

Steve A. Chervitz (on behalf of the Bioperl developers)
Bioperl Coordinator
sac@neomorphic.com

--
Revision history for Bioperl core modules

0.04.4  Wed Feb 17 02:20:13 1999
	- Bug fixes in the Bio::Tools::Blast modules and postclient.pl
	  (see Bio::Tools::Blast::CHANGES).
        - Fixed a bug in Bio::Tools::Fasta::num_seqs().
        - Beefed up the t/Fasta.t test script.
        - Small fix in Bio::Seq::type() (now always returns a string).
        - Changed Bio::Root::Utilities::get_newline_char() to 
          get_newline() since it could return more than one char.
        - Added $NEWLINE and $TIMEOUT_SECS to Bio::Root::Global.
        - Changed default timeout to 20 seconds (was 3).
        - Moved lengthy modification notes to the bottom of some files.
	- Fixed SimpleAlign write_fasta bug.
	- Beefed up SimpleAlign.t test

Revision history for Perl extension Bio::Tools::Blast.pm and related modules.

0.075  Wed Feb 17 01:29:57 1999
        - Bug fix in Blast::Run::postclient.pl which was always printing 
          usage information (reported by Ross Crowhurst).
        - Improved error detection & reporting in Blast::Run::Webblast
	  and Blast::Run::postclient.pl.
        - Bug fixes in HSP.pm: _set_match_stats() now properly handles
          BLASTN output format and matches() properly handles BLASTX
          reports.
        - Fixed detection of substitution matrix type in Blast.pm.
        - Updated Blast example scripts in examples/blast/
	  (in particular, run.pl).
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