Bioperl: Help with blast and vector trimming

[Jonathan Epstein]

Thanks, Steve, I figured this out yesterday.

Perhaps you can use $^X (aka $EXECUTABLE_NAME) in a future version when
invoking this program, to assure correct processing.  I'll experiment with
this and contact you off-list with the results.

The good news is, this is the only instance of this problem which I found
when I searched for such strings in the code.

- Jonathan

At 02:10 PM 2/2/99 -0800, Steve Chervitz wrote:
>Jonathan Epstein writes:
> > I'm trying to use the bioPerl blast functionality, initially for trimming
> > vector from some EST's.
> > 
> > When I run the sample:
> >   perl ./blast_seq.pl seq/seqs.fasta -eid -prog blastp -db yeast -signif
> > 1e-5 -table 2 >runseqs.out
> > I encounter the following error, even though the named file exists.
> > 
> >   UX:sh (sh): ERROR:
> >
/disk3/people/epstein/perl/lib/site_perl/Bio/Tools/Blast/Run/postclient.pl:
> > Not found
> > No Blast results saved.
>
>Try changing the #! line of postclient.pl to /usr/bin/perl instead of
>/usr/local/bin/perl (if your perl executable is not reachable via
>/usr/local/bin/perl). 
>
>SteveC
>sac@neomorphic.com
>
>


Jonathan Epstein                                Jonathan_Epstein@nih.gov
Unit on Biologic Computation                    (301)402-4563
Office of the Scientific Director               Bldg 31, Room 2A31
Nat. Institute of Child Health and Development  31 Center Drive
National Institutes of Health                   Bethesda, MD 20892
=========== Bioperl Project Mailing List Message Footer =======
Project URL: http://bio.perl.org/
For info about how to (un)subscribe, where messages are archived, etc:
http://www.techfak.uni-bielefeld.de/bcd/Perl/Bio/vsns-bcd-perl.html
====================================================================