Bioperl: Suggestions for Structure Object

[Bent Nagstrup Johansen]

>Atomic Coordinates 
>
>        1.Parse and output different structure file formats, at a 
>minimum PDB but could include mmCIF, CML/XML, and other 
>formats. 

The .mol2 format as used in Sybyl would also be very nice to have.

>Analyzing & Editing Structures 
>
>6.Given sequence alignment, compute optimal structure 
>superposition (produce a rotation/translation matrix and/or 
>RMSD). 

Construct multimers based on monomers and transrot matrices.


kind regards,
     Bent Nagstrup, M.Sc.
     Research Unit for Molecular Medicine
     Aarhus University Hospital
     Skejby Sygehus
     Denmark

"A bus station is where the bus stops,
A train station is where the train stops,
On my desk I have a work station...."
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