Bioperl: Flipped out on Bio::Tools::Blast

[Lincoln Stein]

Here's the offending code in Steve's HSP.pm.  As far as I can tell, it
silently flips the sequence endpoints without setting any flag that
this has happened.

    # Check for flipped sequence endpoints (from reverse complement)
    if($self->{$seqType.'Start'} > $self->{$seqType.'Stop'}) {
        my $tmp = $self->{$seqType.'Start'};
        $self->{$seqType.'Start'} = $self->{$seqType.'Stop'};
        $self->{$seqType.'Stop'} = $tmp;
    }

If I comment out this section, what will break?

Lincoln
-- 
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Lincoln D. Stein                           Cold Spring Harbor Laboratory
lstein@cshl.org			                  Cold Spring Harbor, NY
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