Nifty perl programs for biology

[Steve A. Chervitz]

Steve,

> As a follow-up to my previous message, can people let me know of any
> "cool programs" they've done in Perl, or using biological data?

You could use a demo I created for the OiB which does a "virtual" 
Southern analysis of the Yeast genome:

http://genome-www.stanford.edu/Sacch3D/analysis/

This is a fairly rudimentary demo. It does not simulate a true Southern, 
and has no fancy graphical output, but it's kind of neat. It is 
officially "100% Perl" and uses my extended Bio:: modules heirarchy 
which includes Bio::PreSeq.pm.

Steve