Bioperl/ANNOUNCE Central distribution 0.04.4
Steve Chervitz
sac@neomorphic.com (Steve A. Chervitz)
Fri, 19 Feb 1999 07:19:17 -0800 (PST)
=== This mail was sent via the Bioperl Announcement mailing list, see footer ===
Bioperlers,
As promised, a maintenance release of the central distribution is now
available (version 0.04.4). The new Changes are included at the end of
this message.
Bioperl release website: http://bio.perl.org/Core/Latest/
Download directly:
http://bio.perl.org/Core/Latest/bioperl-0.04.4.tar.gz (828K)
http://bio.perl.org/Core/Latest/bioperl-0.04.4.zip (974K)
ftp://bio.perl.org/pub/DIST/bioperl-0.04.4.tar.gz
ftp://bio.perl.org/pub/DIST/bioperl-0.04.4.zip
Regards,
Steve A. Chervitz (on behalf of the Bioperl developers)
Bioperl Coordinator
sac@neomorphic.com
--
Revision history for Bioperl core modules
0.04.4 Wed Feb 17 02:20:13 1999
- Bug fixes in the Bio::Tools::Blast modules and postclient.pl
(see Bio::Tools::Blast::CHANGES).
- Fixed a bug in Bio::Tools::Fasta::num_seqs().
- Beefed up the t/Fasta.t test script.
- Small fix in Bio::Seq::type() (now always returns a string).
- Changed Bio::Root::Utilities::get_newline_char() to
get_newline() since it could return more than one char.
- Added $NEWLINE and $TIMEOUT_SECS to Bio::Root::Global.
- Changed default timeout to 20 seconds (was 3).
- Moved lengthy modification notes to the bottom of some files.
- Fixed SimpleAlign write_fasta bug.
- Beefed up SimpleAlign.t test
Revision history for Perl extension Bio::Tools::Blast.pm and related modules.
0.075 Wed Feb 17 01:29:57 1999
- Bug fix in Blast::Run::postclient.pl which was always printing
usage information (reported by Ross Crowhurst).
- Improved error detection & reporting in Blast::Run::Webblast
and Blast::Run::postclient.pl.
- Bug fixes in HSP.pm: _set_match_stats() now properly handles
BLASTN output format and matches() properly handles BLASTX
reports.
- Fixed detection of substitution matrix type in Blast.pm.
- Updated Blast example scripts in examples/blast/
(in particular, run.pl).
=========== Bioperl Project Announcement List Message Footer =======
Send contributions to vsns-bcd-perl-announce@lists.uni-bielefeld.de
Project URL: http://bio.perl.org/
For info about how to (un)subscribe, where messages are archived, etc:
http://www.techfak.uni-bielefeld.de/bcd/Perl/Bio/vsns-bcd-perl-announce.html
====================================================================