Bioperl/Announce Blast module updated

[Steve A. Chervitz]

Version 0.062 of my Blast module package is now available from either of 
these locations:

http://genome-www.stanford.edu/perlOOP/bioperl/blast/
ftp://bio.perl.org/pub/sac/blast/

This is mainly a maintenance release which includes the following CHANGES:

  - Fixed bugs in Blast::_set_hits() which caused no hits to be
    saved when _parse_hsp_data() threw an exception.

  - Assorted documentation changes. This includes a fix in 
    the docs of Bio::Root::Object.pm that caused a compilation error
    when you try to use it without installing it via Makefile.PL.
    Most modules now have docs for data members in their PODs.

  - Added method strip_html() to Bio::Tools::WWW.pm (a more general
    version than that found in Bio::Tools::Blast::HTML.pm).

  - Includes Bio::Seq.pm version 0.050 (formerly Bio::PreSeq.pm).
    This version has Ewan Birney's modifications (start() and end()
    methods added; numbering() now deprecated).

  - By popular demand, Bio::Root::Object::src_obj() has been changed
    to the more intuitive parent(). All modules have been updated to
    incorporate this change.

Note for developers: I've also updated the CVS system at bio.perl.org.

Steve Chervitz
sac@genome.stanford.edu
http://genome-www.stanford.edu/~sac/


=========== Bioperl Project Mailing List Message Footer =======
Project URL: http://bio.perl.org/
For info about how to (un)subscribe, where messages are archived, etc:
http://www.techfak.uni-bielefeld.de/bcd/Perl/Bio/vsns-bcd-perl-announce.html
============================================================================