[Biojava-l] Issue with FASTA reader

[Andreas Prlic]

Thanks, Dak. I'll create a branch in git which will contain your test, then
we can take it from there.

Andreas



On Mon, Apr 17, 2017 at 9:43 AM, Rojnuckarin, Dak <atipatr at amgen.com> wrote:

> Hi,
>
>
>
> I have a FASTA file that contain one sequence. I initialized FASTA reader
> as described in the tutorial, called process() and get one record as
> expected. However, if I re-initialized another FASTA reader opening the
> same one-record file, called process(1) and null is returned. If I tried to
> read two-record FASTA file, the first process(1) works, but not the second
> call to process(1) return null. Based on a superficial glance, it looks
> like the if statement at line 194 of FastaReader.java may be the culprit.
>
>
>
> Test code attached.
>
>
>
> Thanks,
>
> Dak Rojnuckarin
>
> Research Informatics
>
> Amgen
>
>
>
>
>
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>



-- 
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Dr. Andreas Prlic
RCSB PDB Protein Data Bank
Technical & Scientific Team Lead
University of California, San Diego

Editor Software Section
PLOS Computational Biology

BioJava Project Lead
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