[Biojava-l] Phred Quality Scores and .qual format

[Janier J. Ramírez]

Thanks for reply

Yes I know it, I'm using Biojava 1.X to read SCF files, but many of my SCF files can't be read by Biojava.
And my other problem is that I need to obtain the Phred Quality Scores from Abi an Scf files, and I don't know how to do this.

Please Help

Thanks



----- Mensaje original -----
De: "Hannes Brandstätter-Müller" <biojava at hannes.oib.com>
Para: "Janier J. Ramírez" <jjramirez at estudiantes.uci.cu>
CC: "biojava-l" <biojava-l at lists.open-bio.org>
Enviados: Viernes, 29 de Marzo 2013 7:52:41
Asunto: Re: [Biojava-l] Phred Quality Scores and .qual format


SCF can currently only be read in biojava-legacy. 
I am planning to port the code to BioJave 3 after the switch to git (i.e. next month) 
Until then, I think there are legacy-cookbook examples on how to read scf files. 


Hannes 



On Fri, Mar 29, 2013 at 5:48 AM, Janier J. Ramírez < jjramirez at estudiantes.uci.cu > wrote: 


Hi guys ! 

I'm investigating for the whole genome assembly using AMOS Project. 

I need to obtain the Phred Quality Scores from Abi an Scf files, to then buil a .qual file, but my dude is obtaining the Scores, I have tried many time but I can't reach it !. 

Sorry for my English. 

Thanks for your time 


-- 


Universidad de las Ciencias Informáticas 
Janier J. Ramírez Landaburo 
Facultad - 6 
Tel-837-3121 
http://www.uci.cu 

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