[Biojava-l] Chromatagraph reading in BioJava3?

[Hannes Brandstätter-Müller]

On Tue, Mar 13, 2012 at 11:25, Nick England <nickengland at gmail.com> wrote:
> If I try to run maven I got the following:
>
> [INFO] Building sequence analysis 0.0.1-SNAPSHOT
> [INFO] ------------------------------------------------------------------------
> Downloading: http://www.biojava.org/download/maven/org/biojava/biojava-legacy/1.8.2/biojava-legacy-1.8.2.pom
> Downloading: http://repo.maven.apache.org/maven2/org/biojava/biojava-legacy/1.8.2/biojava-legacy-1.8.2.pom
> [WARNING] The POM for org.biojava:biojava-legacy:jar:1.8.2 is missing,
> no dependency information available
> Downloading: http://www.biojava.org/download/maven/org/biojava/biojava-legacy/1.8.2/biojava-legacy-1.8.2.jar
> Downloading: http://repo.maven.apache.org/maven2/org/biojava/biojava-legacy/1.8.2/biojava-legacy-1.8.2.jar
> [INFO] ------------------------------------------------------------------------
> [INFO] BUILD FAILURE
>
> I get this for 1.8 and 1.8.1 as well:
>
> Could not find artifact org.biojava:biojava-legacy:jar:1.8 in
> biojava-maven-repo (http://www.biojava.org/download/maven/) -> [Help
> 1]
> Could not find artifact org.biojava:biojava-legacy:jar:1.8.1 in
> biojava-maven-repo (http://www.biojava.org/download/maven/) -> [Help
> 1]

I just tried it myself, I see the same results.

My maven tool usually helps me filling out the pom.xml file and
suggests valid entries.
In the artifactId filed, i only get:

biojava
biojava3-alignment
biojava3-core
biojava3-phylo

and when selecting biojava, I only get 3.0 and 3.0.2 in the version field

-> looks linke something is seriously wrong with the maven repo.

Note: when I enter it manually, the 1.8.1 pom is downloaded, but the jar fails.

Hannes