[Biojava-l] From : Chromatagraph reading in BioJava3?

Hannes Brandstätter-Müller biojava at hannes.oib.com
Tue Mar 13 05:56:29 UTC 2012


On Mon, Mar 12, 2012 at 16:04, Nick England <nickengland at gmail.com> wrote:
> Hello all,
>
> I am trying to read some .scf files into BioJava3. I have found the
> example code for 1.3
> (http://biojava.org/wiki/BioJava:Cookbook:SeqIO:ABItoSequence) but I
> can't find any classes in the 3.0 API which look at all related to
> those ones. Is it possible, or should I downgrade to 1.3 if I want to
> be able to read .scf files?
>
> Thanks,
>
> Nick

Should we port that to 3.0.x after the next release? Or for 3.0.3?
Sounds like another nice addition to org.biojava3.genome.parsers -
I'll take a look at it to see what info is stored in these scf files.

Hannes



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