[Biojava-l] Chromatagraph reading in BioJava3?

[Andreas Prlic]

I am not aware of any issues with that. Does either 1.8 or
1.8.2-SNAPSHOT work? Depending on your IDE, you just might have to
refresh your Maven dependencies?

Andreas



On Mon, Mar 12, 2012 at 10:39 AM, Nick England <nickengland at gmail.com> wrote:
> Thanks for the help, 1.8.1 seems to have the classes I need. But I
> haven't been able to get maven to work with biojava 1.8. It works fine
> with 3.X, but when I try to use the dependency:
>                <dependency>
>                        <groupId>org.biojava</groupId>
>                        <artifactId>biojava-legacy</artifactId>
>                        <version>1.8.1</version>
>                </dependency>
> it fails, even though there appears to be the corresponding pom on the
> repository at http://www.biojava.org/download/maven/org/biojava/biojava-legacy/1.8.1/
>
> I have the repo at :
>                 <repository>
>                        <id>biojava-maven-repo</id>
>                        <name>BioJava repository</name>
>                        <url>http://www.biojava.org/download/maven/</url>
>                </repository>
>
> Am I doing something wrong, or has the release version 1.8.1 somehow
> broken on the repository?
>
> Thanks,
>
> Nick
>
> On 12 March 2012 16:43, Andreas Prlic <andreas at sdsc.edu> wrote:
>> Hi Nick,
>>
>> this feature has not been ported to biojava3 so far and you can get it
>> via biojava 1.8.1
>>
>> Andreas
>>
>> On Mon, Mar 12, 2012 at 8:04 AM, Nick England <nickengland at gmail.com> wrote:
>>> Hello all,
>>>
>>> I am trying to read some .scf files into BioJava3. I have found the
>>> example code for 1.3
>>> (http://biojava.org/wiki/BioJava:Cookbook:SeqIO:ABItoSequence) but I
>>> can't find any classes in the 3.0 API which look at all related to
>>> those ones. Is it possible, or should I downgrade to 1.3 if I want to
>>> be able to read .scf files?
>>>
>>> Thanks,
>>>
>>> Nick
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