[Biojava-l] error on hmmer demo

Tony Power power3d at gmail.com
Tue Jul 24 16:15:40 UTC 2012


Hi again,

Sorry about the lack of details.
Here it goes:
Debian testing;
Biojava from debian repository;
OpenJDK 7 (installed from debian rep too);

Thanks,

On Tue, Jul 24, 2012 at 4:19 PM, Andreas Prlic <andreas at sdsc.edu> wrote:
> Thanks for the feedback. It works in my environments, but it might have to
> do with the conversion of JSON->Java object.
>
> - How did you get your biojava setup? Maven? manually?
> - If manual setup, are you using net.sf.json-lib v. 2.3?
> - What is your operating system and java version?
>
> Thanks,
>
> Andreas
>
>
> On Tue, Jul 24, 2012 at 3:09 AM, Tony Power <power3d at gmail.com> wrote:
>>
>> Hi all,
>>
>> When I am trying to run the demo at:
>> http://biojava.org/wiki/BioJava:CookBook3:HmmerService
>>
>> I get the following error:
>>
>> java.lang.ClassCastException: java.lang.Long cannot be cast to
>> java.lang.Integer
>> #                Domain        ACC      Start   End       eValue
>> Description
>>         at
>> org.biojava3.ws.hmmer.RemoteHmmerScan.scan(RemoteHmmerScan.java:119)
>>         at
>> org.biojava3.ws.hmmer.RemoteHmmerScan.scan(RemoteHmmerScan.java:42)
>>
>> I have BioJava 3.0.4.
>>
>> Thanks,
>> Tony
>> _______________________________________________
>> Biojava-l mailing list  -  Biojava-l at lists.open-bio.org
>> http://lists.open-bio.org/mailman/listinfo/biojava-l
>
>
>



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