[Biojava-l] error on hmmer demo

Andreas Prlic andreas at sdsc.edu
Tue Jul 24 15:19:05 UTC 2012


Thanks for the feedback. It works in my environments, but it might have to
do with the conversion of JSON->Java object.

- How did you get your biojava setup? Maven? manually?
- If manual setup, are you using net.sf.json-lib v. 2.3?
- What is your operating system and java version?

Thanks,

Andreas


On Tue, Jul 24, 2012 at 3:09 AM, Tony Power <power3d at gmail.com> wrote:

> Hi all,
>
> When I am trying to run the demo at:
> http://biojava.org/wiki/BioJava:CookBook3:HmmerService
>
> I get the following error:
>
> java.lang.ClassCastException: java.lang.Long cannot be cast to
> java.lang.Integer
> #                Domain        ACC      Start   End       eValue
>  Description
>         at
> org.biojava3.ws.hmmer.RemoteHmmerScan.scan(RemoteHmmerScan.java:119)
>         at
> org.biojava3.ws.hmmer.RemoteHmmerScan.scan(RemoteHmmerScan.java:42)
>
> I have BioJava 3.0.4.
>
> Thanks,
> Tony
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