[Biojava-l] NullPointerException when using Alignments.getMultipleSequenceAlignment

Andreas Prlic andreas at sdsc.edu
Wed Oct 5 19:30:41 UTC 2011

Can you provide the fasta file? otherwise this is difficult to reproduce...


On Wed, Oct 5, 2011 at 12:22 PM, Hannes Brandstätter-Müller
<biojava at hannes.oib.com> wrote:
> 2011/10/5 Spencer Bliven <sbliven at ucsd.edu>:
>> In the current SVN code (and therefor probably Biojava 3.0.2),
>> CookbookMSA.java includes that import statement but is otherwise identical
>> to the wiki version. It runs just fine for me. Probably updating to Biojava
>> 3.0.2 will fix the null pointer exception.
> I installed it via Maven just last week - so I guess it should be on
> 3.0.2 - I'll check tomorrow.
> Anyhow, the problem isn't the wiki (I already updated that, btw) but
> the fact that it seems to work with Protein Sequences, but when I use
> my DNA sequences, it breaks.
> If you go to my first post, I copied my code there (just add a wrapper
> main that supplies a valid fasta file as parameter)
> Hannes
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