[Biojava-l] Reading the abi format using Biojava 3.x

Andreas Prlic andreas at sdsc.edu
Thu May 19 00:29:19 UTC 2011


Hi Benjamin,
I tried to find an answer on the wiki but I couldn't find it.

Is there a way to read the abi file format (like in this example
> http://www.biojava.org/wiki/BioJava:Cookbook:SeqIO:ABItoSequence ) but
> using
> the version 3.x of Biojava?
>

 you need to use BioJava 1.8 for this.

 Andreas


I couldn't find the class ABITrace anymore in this API. And if it exist, in
> which module would it be
> (biojava3-core, biojava3-alignment, biojava3-genome,
> biojava3-structure, biojava3-structure-gui, biojava3-phylo,
> biojava3-protmod
> or biojava3-ws) ?
> And if the API change is it possible to have a example on how to do the
> same
> things as the example provided in
> http://www.biojava.org/wiki/BioJava:Cookbook:SeqIO:ABItoSequence ?
>
> Benjamin
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