[Biojava-l] Reading the abi format using Biojava 3.x

Benjamin Pavie benjamin.pavie at gmail.com
Wed May 18 22:30:18 UTC 2011


Hi Everybody,
I tried to find an answer on the wiki but I couldn't find it.
Is there a way to read the abi file format (like in this example
http://www.biojava.org/wiki/BioJava:Cookbook:SeqIO:ABItoSequence ) but using
the version 3.x of Biojava?
I couldn't find the class ABITrace anymore in this API. And if it exist, in
which module would it be
(biojava3-core, biojava3-alignment, biojava3-genome,
biojava3-structure, biojava3-structure-gui, biojava3-phylo,
biojava3-protmod
or biojava3-ws) ?
And if the API change is it possible to have a example on how to do the same
things as the example provided in
http://www.biojava.org/wiki/BioJava:Cookbook:SeqIO:ABItoSequence ?

Benjamin



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