[Biojava-l] New Maven Pom issue

Scooter Willis willishf at ufl.edu
Mon Mar 7 18:37:26 UTC 2011


I think those are all imports from biojava 1.X. We tried to use
org.biojava3 for packages where code is in biojava3.

On Mon, Mar 7, 2011 at 1:11 PM, Jay Vyas <jayunit100 at gmail.com> wrote:
> Hi guys : I tried to update my biojava pom , and it looks like I missed
> something.
>
> In particular the following biojava-core classes are missing.
> import org.biojava.bio.BioException;
> import org.biojava.bio.proteomics.IsoelectricPointCalc;
> import org.biojava.bio.proteomics.MassCalc;
> import org.biojava.bio.seq.ProteinTools;
>
> Heres the way my new pom looks : I think there is a problem with
> biojava-core ?
>
> <dependency>
>                <groupId>org.biojava</groupId>
>                <artifactId>biojava3-alignment</artifactId>
>                <version>3.0.1</version>
>                <scope>compile</scope>
>            </dependency>
>            <dependency>
>                <groupId>org.biojava</groupId>
>                <artifactId>biojava3-core</artifactId>
>                <version>3.0.1</version>
>            </dependency>
>            <dependency>
>                <groupId>org.biojava</groupId>
>                <artifactId>biojava3-protmod</artifactId>
>                <version>3.0.1</version>
>                <scope>compile</scope>
> </dependency>
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