[Biojava-l] biojava3 and symbol

Andreas Prlic andreas at sdsc.edu
Mon Feb 28 06:04:46 UTC 2011


Hi Francois,

SymbolLists are part of BioJava 1.8 (the legacy version) and not 3.0.
You might want to get the previous version installed. It is available
from Maven as well...

Andreas

2011/2/25 François Le Fevre <flf.mib at gmail.com>:
> Hello
> I am a newbie in biojava3.
> I have installed the maven version.
>
> I have a question : is there a way to go from DNASequence to SymbolList?
> I would like to study codons and their frequency in several organisms.
> It was easy with biojava with
>
> "SymbolList codons  = SymbolListViews.windowedSymbolList(seq, 3);"
> and
> "DistributionTrainerContext"
>
> But now I am a little lost between maven biojava3 and biojava.
> So if anyone could explain me how to get codons view from DNASequence, it
> could be great.
>
> Thanks a lot!
>
> Francois
>
>
> --
> ----------------------
> Francois LE FEVRE
>
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