[Biojava-l] sort fasta file

[Richard Holland]

I can't see anything in the code that would cause that behaviour. :( Could you provide sample code and a supporting FASTA file that replicates the problem?

On 26 Mar 2010, at 10:36, Andy Law (RI) wrote:

> 
> On 26 Mar 2010, at 10:28, Richard Holland wrote:
> 
>> That there be a bug.
> 
> Albeit one with a simple workaround while the SVN server is broken :o}
> 
>> 
>> On 26 Mar 2010, at 10:12, Andy Law (RI) wrote:
>> 
>>> 
>>> On 26 Mar 2010, at 09:57, xyz wrote:
>>> 
>>>> @Andy: Thank you for the explanation. After the last sequence in the
>>>> input file in no newline character.
>>>> 
>>> 
>>> Then RichSequenceIterator / RichSequence.IOTools.readFasta() are not seeing the last sequence when the file is not terminated with a newline character. Is this a bug or a feature, folks?
>>> 
>>> Later,
>>> 
>>> Andy
>>> --------
>>> Yada, yada, yada...
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>>> 
>>> 
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>> 
>> --
>> Richard Holland, BSc MBCS
>> Operations and Delivery Director, Eagle Genomics Ltd
>> T: +44 (0)1223 654481 ext 3 | E: holland at eaglegenomics.com
>> http://www.eaglegenomics.com/
>> 
> 
> Later,
> 
> Andy
> --------
> Yada, yada, yada...
> The University of Edinburgh is a charitable body, registered in Scotland, with registration number SC005336
> Disclaimer: This e-mail and any attachments are confidential and intended solely for the use of the recipient(s) to whom they are addressed. If you have received it in error, please destroy all copies and inform the sender.
> 
> 
> 

--
Richard Holland, BSc MBCS
Operations and Delivery Director, Eagle Genomics Ltd
T: +44 (0)1223 654481 ext 3 | E: holland at eaglegenomics.com
http://www.eaglegenomics.com/