[Biojava-l] sort fasta file

[Richard Holland]

Do you have a fix? I can't remember if you've got SVN access or not - if you do, please do commit it, otherwise email me a patch and I'll commit it for you.

On 26 Mar 2010, at 10:36, Andy Law (RI) wrote:

> 
> On 26 Mar 2010, at 10:28, Richard Holland wrote:
> 
>> That there be a bug.
> 
> Albeit one with a simple workaround while the SVN server is broken :o}
> 
>> 
>> On 26 Mar 2010, at 10:12, Andy Law (RI) wrote:
>> 
>>> 
>>> On 26 Mar 2010, at 09:57, xyz wrote:
>>> 
>>>> @Andy: Thank you for the explanation. After the last sequence in the
>>>> input file in no newline character.
>>>> 
>>> 
>>> Then RichSequenceIterator / RichSequence.IOTools.readFasta() are not seeing the last sequence when the file is not terminated with a newline character. Is this a bug or a feature, folks?
>>> 
>>> Later,
>>> 
>>> Andy
>>> --------
>>> Yada, yada, yada...
>>> The University of Edinburgh is a charitable body, registered in Scotland, with registration number SC005336
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>>> 
>>> 
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>> 
>> --
>> Richard Holland, BSc MBCS
>> Operations and Delivery Director, Eagle Genomics Ltd
>> T: +44 (0)1223 654481 ext 3 | E: holland at eaglegenomics.com
>> http://www.eaglegenomics.com/
>> 
> 
> Later,
> 
> Andy
> --------
> Yada, yada, yada...
> The University of Edinburgh is a charitable body, registered in Scotland, with registration number SC005336
> Disclaimer: This e-mail and any attachments are confidential and intended solely for the use of the recipient(s) to whom they are addressed. If you have received it in error, please destroy all copies and inform the sender.
> 
> 
> 

--
Richard Holland, BSc MBCS
Operations and Delivery Director, Eagle Genomics Ltd
T: +44 (0)1223 654481 ext 3 | E: holland at eaglegenomics.com
http://www.eaglegenomics.com/