[Biojava-l] How to parse pairwise alignment result string

[Andreas Draeger]

Hi David!

Yes, the NeedlemanWunsch class and also the SmithWaterman class should 
not produce these Strings but rather dedicated Alignment objects that 
can be further processed more easily. I think they already do produce 
some alignment object but this seems to be sub-optimal. I am going to 
improve this but this will take some time.

Cheers
Andreas

-- 
Dipl.-Bioinform. Andreas Dräger
Eberhard Karls University Tübingen
Center for Bioinformatics (ZBIT)
Sand 1
72076 Tübingen
Germany

Phone: +49-7071-29-70436
Fax:   +49-7071-29-5091