[Biojava-l] visualizing pair alignment to a genome

[nathan genome]

hi
i am working on genomic variations.

i am interested to initially visualize mappings from clone-ends to reference
sequence.
i have data in the following tab. format :

CAX100A01FOR1  1       748     scaffold_116    507411  508161
CAX100A01REV1  1       702     scaffold_116    512322  511611

1st & 7th cols. represent clone-ends, the numbers are positions, 4th col.
indicates the reference.

How do i visualize this pair alignment in a window with biojava.

thanks
Natthan