[Biojava-l] Saving back chromatogram?

[Ashika Umanga Umagiliya]

Cheers.


I still haven't implemented the editor.I assume for basecall editing, I 
can use 'Edit' class.

Like:

ABIFChromatogram a;
..
..
a.getBaseCalls().edit(new Edit(.......))


And for Quality values, I am hoping to read and store Qualitly files 
generated by 'phred'.And when user edit the basecall, I am planing to 
edit stored quality values accordinly.
Finally the fasta file is generated using ABIFChromatogram.getBaseCalls()...
and Quality file will be generated using the structure I used above.

Any issues with this approach?

Many thanks,
Umanga


Russ Kepler wrote:
> On Thursday 19 February 2009 22:48:45 Ashika Umanga Umagiliya wrote:
>
>   
>> My problem is can I use the same Quality files ,with  the modified
>> callbases ?
>>     
>
> Edit the quality data in parallel with the chromatogram.  I would assume that 
> the editor is relatively sure of their edits, so I would give them a high 
> confidence level when I generate the trace fasta and quality file.
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