[Biojava-l] A Exception Has Occurred During Parsing.

[Ilhami Visne]

Hi,

I'm following the suggestion "Please submit the details that follow to
biojava-l at biojava.org or post a bug report to http://bugzilla.open-bio.org/"
.

The sequence of concerns is at
http://www.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi?db=nucleotide&id=39645757&rettype=gb&seq_start=1353&seq_stop=2128&strand=1

Format_object=org.biojavax.bio.seq.io.GenbankFormat
Accession=null
Id=null
Comments=Bad section
Parse_block=
Stack trace follows ....


        at
org.biojavax.bio.seq.io.GenbankFormat.readSection(GenbankFormat.java:603)
        at
org.biojavax.bio.seq.io.GenbankFormat.readRichSequence(GenbankFormat.java:278)
        at
org.biojavax.bio.seq.io.RichStreamReader.nextRichSequence(RichStreamReader.java:110)
        ... 8 more
Caused by: java.lang.NullPointerException
        at
org.biojavax.bio.seq.io.GenbankFormat.readSection(GenbankFormat.java:593)
        ... 10 more
org.biojava.bio.BioException: IO failure whilst reading from Genbank

Any quick fix,patch?

thanks.
Ilhami Visne