[Biojava-l] BioJava Question - Evolutionary Rate Calculation

[Andreas Prlic]

Hi Jean-Paul,

You can use BioJava to calculate pairwise alignments between your sequences:

http://biojava.org/wiki/BioJava:CookBook:DP:PairWise2

Andreas


On Mon, Apr 20, 2009 at 7:56 AM, JP <jp at javaclass.co.uk> wrote:
> Hi there at Biojava,
>
> I have a number of orthologue protein (sequences) from different species - I
> would like to calculate the distance (score) between each of these
> (programatically) based on the sequence.
>
> Can anyone suggest a way to do this (I'd rather use an existing bit of
> software than having to reinvent the wheel) ?  Surely this software must
> exist...(hopefully in biojava).
>
> Many Thanks
> Jean-Paul Ebejer, Malta
> _______________________________________________
> Biojava-l mailing list  -  Biojava-l at lists.open-bio.org
> http://lists.open-bio.org/mailman/listinfo/biojava-l
>