[Biojava-l] [sort of off topic] Java data mining APIs

[Richard Holland]

Sounds interesting. If someone can stick a link to a good detailed use
case on the wiki, I'll see what I can fit in to BJ3.

Incidentally, I intend to start dev (and simultaneous doc) of BJ3 next
week. Need to get a couple of things sorted first though.

cheers,
Richard

2008/6/10 Michael Heuer <heuermh at acm.org>:
> Mark Schreiber wrote:
>
>> Hi -
>>
>> I am wanting to develop something to do some datamining of translational
>> data (sequence clinical and microarray). I want to make use of an already
>> existing data mining API.
>
> Bah, that's no fun.  ;)
>
>
>> Ones I have found so far are RapidMiner (YALE), WEKA and JDM (which seems to
>> be a JSR).  Does anyone have any views on which is good or useful (or not)?
>
> Some of what you need might be in Colt (e.g. hep.aida packages).
>
>
> JScience has nice maths APIs
>
>> http://jscience.org/api/overview-summary.html
>
>
> Alias-i LingPipe 3.5.0 is a commercial product focused on text-mining.  A
> lot of the API is generic though.
>
>> http://alias-i.com/lingpipe/docs/api/overview-summary.html
>
>
> Or how about biojava 3.x?
>
> A lot of interesting new use cases in translational fields...
>
>   michael
>
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