[Biojava-l] BioJava 3 design discussion coming to an end

[Richard Holland]

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Hi Fazel.

I'm going away for 2 weeks in about 10 minutes time... so I'm posting
your question to the list in the hope that someone else can answer it
whilst I'm away.

cheers,
Richard

Fazel Keshtkar wrote:
> Dear Richard,
> 
> I'm using biojava, and I'm new.. but I saw some problem in it:
> - Biojava is not able to read symbol if  there are gap in fasta file or
> MSA.
> i.e. if I want to count my symbols in FASTA file which for sure might
> there gap, it gave me error!!!
> 
> If I'm wrong or I need to use another technique please let me know..
> 
> cheers,
> fazel
> ----- Original Message ----- From: "Richard Holland" <holland at ebi.ac.uk>
> To: <biojava-dev at biojava.org>; "biojava-l" <biojava-l at lists.open-bio.org>
> Sent: Friday, February 01, 2008 4:43 AM
> Subject: Re: [Biojava-l] BioJava 3 design discussion coming to an end
> 
> 
> Hi all.
> 
> It's now February and the time has come for me to take the contents of
> the BioJava 3 discussion wiki page and start compiling it into a more
> formal proposal.
> 
> I'll let you know when I'm done by posting the proposal document on the
> BioJava website - probably around the end of this month.
> 
> The formal proposal document will then itself be open to discussion and
> modification for a short period before any development it requires will
> commence.
> 
> cheers,
> Richard
> 
> PS. I will be working from a snapshot of the wiki. Therefore any changes
> made to the wiki from now on may not get included.
> 
> 
> Richard Holland wrote:
>>>> Hi all.
>>>>
>>>> At the end of January I will be taking the contents of our BioJava 3
>>>> discussion wiki page and compiling them into a more formal design
>>>> proposal.
>>>>
>>>> If you have made any comments elsewhere (e.g. by email) which you would
>>>> like to be considered in the final design proposal, then please add them
>>>> to the wiki page (or its associated Talk page) before the end of the
>>>> month.
>>>>
>>>> (I won't be trawling through email archives looking for comments so you
>>>> really must copy your comments across to the wiki if you want them to be
>>>> included!).
>>>>
>>>> The wiki address is:
>>>>
>>>>    http://www.biojava.org/wiki/BioJava3_Proposal
>>>>
>>>> cheers,
>>>> Richard
>>>>
> _______________________________________________
> Biojava-l mailing list  -  Biojava-l at lists.open-bio.org
> http://lists.open-bio.org/mailman/listinfo/biojava-l
> 
> --
> Richard Holland (BioMart)
> EMBL EBI, Wellcome Trust Genome Campus,
> Hinxton, Cambridgeshire CB10 1SD, UK
> Tel. +44 (0)1223 494416
> 
> http://www.biomart.org/
> http://www.biojava.org/
_______________________________________________
Biojava-l mailing list  -  Biojava-l at lists.open-bio.org
http://lists.open-bio.org/mailman/listinfo/biojava-l
>>

- --
Richard Holland (BioMart)
EMBL EBI, Wellcome Trust Genome Campus,
Hinxton, Cambridgeshire CB10 1SD, UK
Tel. +44 (0)1223 494416

http://www.biomart.org/
http://www.biojava.org/
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