[Biojava-l] reverse translation

Richard Holland holland at eaglegenomics.com
Tue Aug 26 14:20:50 UTC 2008

Have you tried using the Protein-Term alphabet instead?


2008/8/21 Kneisler, John (Raytheon) <John.Kneisler at uspto.gov>:
> I am new to BioJava and I am trying to write a reverse translation
> function.  Find the most probable DNA symbolList using a  given a
> protein symbolList and a translation table.  I tried using an RNA
> alphabet and protein alphabet and then I tried to use the
> SimpleReversibleTranslationTable's untranslate method and I got an
> "org.biojava.bio.symbol.IllegalAlphabetException: Couldn't create
> translation table as the alphabets were different sizes:".  Is there any
> way to create a reverse translation function using the BioJava
> framework?
> Thanks
> John
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Richard Holland
Finance Director
Eagle Genomics

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