[Biojava-l] Secondary Structure data from PDB file

Andrew Walsh walsh at andrew.cmu.edu
Fri May 25 19:05:35 UTC 2007

Do I observe correctly that org.biojava.bio.structure.io.PDBFileParser 
does not currently handle secondary structure annotation (e.g. HELIX, 
SHEET, or TURN records), and thus no secondary structure information is 
ever added to an AminoAcid?  If this is the case, is there any 
documentation on how such data is supposed to be added to the Map that 
represents secondary structure data (i.e. what key/value pairs are 
expected for common secondary structure features)?

Andrew Walsh

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