[Biojava-l] blast parser

mark.schreiber at novartis.com mark.schreiber at novartis.com
Wed Jul 12 02:32:00 UTC 2006

Hi -

Essentially someone needs to do some testing with the new versions of 
blast. If the parser seems to produce the correct results then we can add 
version 2.x.x to the 'certified' list.

As always we need volunteers. Also if people notice it doesn't work then 
perhaps submit a bug report detailing the version etc.


- Mark

Dewkid <online1 at dewkid.com>
Sent by: biojava-l-bounces at lists.open-bio.org
07/12/2006 03:24 AM

        To:     biojava-l at lists.open-bio.org
        cc:     (bcc: Mark Schreiber/GP/Novartis)
        Subject:        Re: [Biojava-l] blast parser

I'm new to this list, but I also ran into this problem.  The easy 
is to call the setModeLazy method in your BlastLikeSaxParser object, and 
will ignore the version.  Near as I can tell, the parser works just fine
this way.

Still, I'm anxious to see this parser updated to support the newer blast
View this message in context: http://www.nabble.com/blast-parser-tf1924149.html#a5276129
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