[Biojava-l] BioJavaX docbook minor corrections

[mark.schreiber at novartis.com]

Thanks for pointing these out. Corrected now in CVS.

The use of name parameters ( namespace= :nsp) is prefered (and the previous syntax was incorrect). As you point out, 
set version is a private method so you cannot access it (even in Hibernate 
which does some pretty odd things) so I changed this to you setDescription 
suggestion.

- Mark





Felix Dreher <dreher at mpiib-berlin.mpg.de>
Sent by: biojava-l-bounces at portal.open-bio.org
02/24/2006 08:53 PM

 
        To:     biojava-l at biojava.org
        cc:     (bcc: Mark Schreiber/GP/Novartis)
        Subject:        [Biojava-l] BioJavaX docbook minor corrections


Hello,

just two suggestions/corrections about the BioJavaX-docbook.
In the section "Configuring your application to use Hibernate and BioSQL", 
complete example,
I found two errors (or at least these parts don't work in my test-app).


1)
// print out all the sequences in the namespace
        Query sq = session.createQuery("from BioEntry where 
namespace=?",ns);

--> should probably be:
       Query sq = session.createQuery("from BioEntry where 
namespace=:nsp");
       sq.setParameter("nsp",ns);



2)
// if the sequence is called bloggs, change its version to 99
       be.setVersion(99);

--> can't use the method setVersion(int) --> but e.g. 
setDescription("XYZ");



Regards,
Felix



-- 
Felix Dreher
Max-Planck-Institute for Infection Biology
Campus Charité Mitte
Department of Immunology
Mailing address: Schumannstraße 21/22
Visitors: Virchowweg 12
10117 Berlin
Germany
Tel.: +49 (0)30 28460-254 / -494
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