[Biojava-l] location of biojava.jar on a linux system

Andy Hammer facemann at yahoo.com
Fri Feb 11 14:02:02 EST 2005

I think I am on the same page as everyone here.
But I still get:
>java -cp xerces.jar:biojava.jar -jar MotifSearch.jar 
Exception in thread "main"

More info:
ahammer at marchingmen2:~/ext> pwd
ahammer at marchingmen2:~/ext> 
ahammer at marchingmen2:~/ext> echo $CLASSPATH
ahammer at marchingmen2:~/ext> 
ahammer at marchingmen2:~/ext> ls -l 
total 4772
-rw-r--r--    1 ahammer  gestelan  2674782 2003-10-15
10:37 biojava.jar
-rw-r--r--    1 ahammer  gestelan    93463 2003-10-07
17:59 bytecode.jar
-rw-r--r--    1 ahammer  gestelan    30117 2003-10-07
17:59 commons-cli.jar
-rw-r--r--    1 ahammer  gestelan   145563 2003-10-15
10:04 grammars.jar
-rw-r--r--    1 ahammer  gestelan    46056 2003-10-07
17:59 htmlparser.jar
-rw-r--r--    1 ahammer  gestelan    50962 2005-02-10
11:38 MotifSearch.jar
-rw-r--r--    1 ahammer  gestelan  1808885 2005-02-11
11:55 xerces.jar
ahammer at marchingmen2:~/ext> 

I don't understard why this doesn't work.  It works
fine on a windows box.  It makes me think it wouldn't
work even if I had access to the jre/ext directory.


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